› 5yz6

Solution NMR

Solution structure of LysM domain from a chitinase derived from Volvox carteri

Released:
DOI: 10.2210/pdb5yz6/pdb
PDB entry 5yz6 coloured by chain, ensemble of 20 models, front view.
PDB entry 5yz6 coloured by chain, ensemble of 20 models, side view.
PDB entry 5yz6 coloured by chain, ensemble of 20 models, top view.
Source organism: Volvox carteri f. nagariensis
Primary publication:
Structures and chitin-binding properties of two N-terminal lysin motifs (LysMs) found in a chitinase from Volvox carteri.
Kitaoku Y, Nishimura S, Hirono T, Suginta W, Ohnuma T, Fukamizo T
Glycobiology 29 565-575 (2019)
PMID: 30976779

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-112919 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
LysM domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 49 amino acids
Theoretical weight: 5.31 KDa
Source organism: Volvox carteri f. nagariensis
Expression system: Escherichia coli
UniProt:
  • Canonical: D8UFB5 (Residues: 47-94; Coverage: 16%)
Gene names: VOLCADRAFT_127242, chi4
Sequence domains: LysM domain
Structure domains: LysM domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 92%
Refinement method: simulated annealing
Expression system: Escherichia coli

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