5y5x

Electron Microscopy
5Å resolution

V/A-type ATPase/synthase from Thermus thermophilus, rotational state 1

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 26-mer (preferred)
PDBe Complex ID:
PDB-CPX-131510 (preferred)
Entry contents:
9 distinct polypeptide molecules
Macromolecules (9 distinct):
V-type ATP synthase alpha chain Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 578 amino acids
Theoretical weight: 63.7 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q56403 (Residues: 1-578; Coverage: 100%)
Gene names: TTHA1273, atpA
Sequence domains:
V-type ATP synthase beta chain Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 478 amino acids
Theoretical weight: 53.22 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q56404 (Residues: 1-478; Coverage: 100%)
Gene names: TTHA1272, atpB
Sequence domains:
V-type ATP synthase subunit D Chain: G
Molecule details ›
Chain: G
Length: 223 amino acids
Theoretical weight: 24.72 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: O87880 (Residues: 1-223; Coverage: 100%)
Gene names: TTHA1271, atpD, vatD
Sequence domains: ATP synthase subunit D
V-type ATP synthase subunit F Chain: H
Molecule details ›
Chain: H
Length: 104 amino acids
Theoretical weight: 11.29 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P74903 (Residues: 1-104; Coverage: 100%)
Gene names: TTHA1274, atpF, vatF
Sequence domains: ATP synthase (F/14-kDa) subunit
V-type ATP synthase, subunit (VAPC-THERM) Chains: I, K
Molecule details ›
Chains: I, K
Length: 120 amino acids
Theoretical weight: 13.17 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SIT5 (Residues: 1-120; Coverage: 100%)
Gene name: TTHA1279
Sequence domains: Vacuolar (H+)-ATPase G subunit
V-type ATP synthase subunit E Chains: J, L
Molecule details ›
Chains: J, L
Length: 188 amino acids
Theoretical weight: 20.7 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P74901 (Residues: 1-188; Coverage: 100%)
Gene names: TTHA1276, atpE, vatE
Sequence domains: ATP synthase (E/31 kDa) subunit
V-type ATP synthase subunit C Chain: M
Molecule details ›
Chain: M
Length: 323 amino acids
Theoretical weight: 35.97 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P74902 (Residues: 1-323; Coverage: 100%)
Gene names: TTHA1275, atpC
Sequence domains: ATP synthase (C/AC39) subunit
V-type ATP synthase subunit I Chain: N
Molecule details ›
Chain: N
Length: 652 amino acids
Theoretical weight: 72.2 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SIT6 (Residues: 1-652; Coverage: 100%)
Gene name: TTHA1278
Sequence domains:
V-ATPase proteolipid subunit C-like domain-containing protein Chains: O, P, Q, R, S, T, U, V, W, X, Y, Z
Molecule details ›
Chains: O, P, Q, R, S, T, U, V, W, X, Y, Z
Length: 99 amino acids
Theoretical weight: 9.84 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q5SIT7 (Residues: 1-99; Coverage: 100%)
Gene name: TTHA1277
Sequence domains: ATP synthase subunit C

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution:
Relevant EMDB volumes: EMD-6810