5xwt

X-ray diffraction
4.18Å resolution

Crystal structure of PTPdelta Ig1-Fn1 in complex with SALM5 LRR-Ig

Released:

Function and Biology Details

Reaction catalysed:
Protein tyrosine phosphate + H(2)O = protein tyrosine + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-179142 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Receptor-type tyrosine-protein phosphatase delta Chains: A, C
Molecule details ›
Chains: A, C
Length: 402 amino acids
Theoretical weight: 44.09 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
UniProt:
  • Canonical: Q64487 (Residues: 20-410; Coverage: 21%)
Gene name: Ptprd
Sequence domains:
Leucine-rich repeat and fibronectin type-III domain-containing protein 5 Chains: B, D
Molecule details ›
Chains: B, D
Length: 367 amino acids
Theoretical weight: 41.38 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q96NI6 (Residues: 18-379; Coverage: 52%)
Gene names: C14orf146, LRFN5, SALM5
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL44XU
Spacegroup: P212121
Unit cell:
a: 98.26Å b: 169.753Å c: 210.946Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.263 0.261 0.311
Expression system: Homo sapiens