› 5ocp

X-ray diffraction
1.7Å resolution

The periplasmic binding protein component of the arabinose ABC transporter from Shewanella sp. ANA-3 bound to alpha and beta-L-arabinofuranose

Released:
DOI: 10.2210/pdb5ocp/pdb
PDB entry 5ocp coloured by chain, front view.
PDB entry 5ocp coloured by chain, side view.
PDB entry 5ocp coloured by chain, top view.
Source organism: Shewanella sp. ANA-3
Entry author: Herman R

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-106114 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Periplasmic binding protein domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 302 amino acids
Theoretical weight: 32.81 KDa
Source organism: Shewanella sp. ANA-3
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0KWY4 (Residues: 23-313; Coverage: 100%)
Gene name: Shewana3_2073
Sequence domains: Periplasmic binding protein domain

Ligands and Environments

4 bound ligands:
Ligand GOL 8 x GOL
Ligand AHR 2 x AHR
Ligand FUB 2 x FUB
Ligand ACT 1 x ACT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 73.917Å b: 86.327Å c: 87.282Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.169 0.167 0.204
Expression system: Escherichia coli BL21(DE3)

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