5o05

X-ray diffraction
2Å resolution

GII.10 Vietnam 026 norovirus protruding domain in complex with Nanobody Nano-42

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-212309 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Nanobody (VHH) Nano-42 Chains: C, D
Molecule details ›
Chains: C, D
Length: 120 amino acids
Theoretical weight: 13.19 KDa
Source organism: Vicugna pacos
Expression system: Escherichia coli
Structure domains: Immunoglobulins
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 315 amino acids
Theoretical weight: 34.51 KDa
Source organism: Norwalk virus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5F4T5 (Residues: 224-538; Coverage: 58%)
Sequence domains: Calicivirus coat protein C-terminal
Structure domains:

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID23-2
Spacegroup: P212121
Unit cell:
a: 87.93Å b: 105.36Å c: 107.75Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.18 0.222
Expression system: Escherichia coli