› 5n0f

X-ray diffraction
1.69Å resolution

The catalytic domain, BcGH76, of Bacillus circulans Aman6 in complex with 1,6-ManSIFG

Released:
DOI: 10.2210/pdb5n0f/pdb
PDB entry 5n0f coloured by chain, front view.
PDB entry 5n0f coloured by chain, side view.
PDB entry 5n0f coloured by chain, top view.
Source organism: Niallia circulans
Primary publication:
An atypical interaction explains the high-affinity of a non-hydrolyzable S-linked 1,6-α-mannanase inhibitor.
Belz T, Jin Y, Coines J, Rovira C, Davies GJ, Williams SJ
Chem Commun (Camb) 53 9238-9241 (2017)
PMID: 28766587

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195578 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
CBM6 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 362 amino acids
Theoretical weight: 40.93 KDa
Source organism: Niallia circulans
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9Z4P9 (Residues: 35-375; Coverage: 58%)
Gene name: aman6
Sequence domains: Glycosyl hydrolase family 76
Structure domains: Glycosyltransferase

Ligands and Environments

1 bound ligand:
Ligand 7K2 2 x 7K2
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I04
Spacegroup: P212121
Unit cell:
a: 85.05Å b: 86.4Å c: 103.65Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.156 0.152 0.218
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

3 citation in other articles

Chemoenzymatic synthesis of sulfur-linked sugar polymers as heparanase inhibitors.
He et al. (2022)
2 more