› 5mgr

X-ray diffraction
1.8Å resolution

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-171437 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Killer cell lectin-like receptor subfamily B member 1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 146 amino acids
Theoretical weight: 17.11 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
UniProt:
  • Canonical: Q12918 (Residues: 90-225; Coverage: 60%)
Gene names: CLEC5B, KLRB1, NKRP1A
Sequence domains: Lectin C-type domain

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer
1 bound ligand:
Ligand NAG 2 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P3121
Unit cell:
a: 68.241Å b: 68.241Å c: 127.195Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.168 0.167 0.202
Expression system: Homo sapiens

Quick links

Citations

2 review citations

Small-angle X-ray scattering studies of enzymes.
Byer et al. (2023)
1 more

1 mention without citation

Structure of the human NK cell NKR-P1:LLT1 receptor:ligand complex reveals clustering in the immune synapse.
Bláha et al. (2022)