5lxi

X-ray diffraction
1.44Å resolution

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-190495 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Gamma-aminobutyric acid receptor-associated protein-like 1 Chains: B, D
Molecule details ›
Chains: B, D
Length: 123 amino acids
Theoretical weight: 14.6 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9H0R8 (Residues: 1-117; Coverage: 100%)
Gene names: GABARAPL1, GEC1
Sequence domains: Autophagy protein Atg8 ubiquitin like
Structure domains: Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
Cysteine protease ATG4B Chains: C, E
Molecule details ›
Chains: C, E
Length: 10 amino acids
Theoretical weight: 1.29 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9Y4P1 (Residues: 384-393; Coverage: 3%)
Gene names: APG4B, ATG4B, AUTL1, KIAA0943

Ligands and Environments

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: C2
Unit cell:
a: 124.888Å b: 72.377Å c: 30.62Å
α: 90° β: 99.21° γ: 90°
R-values:
R R work R free
0.199 0.197 0.23
Expression systems:
  • Escherichia coli BL21(DE3)
  • Not provided