5k98

X-ray diffraction
3.99Å resolution

Structure of HipA-HipB-O2-O3 complex

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexamer (preferred)
PDBe Complex ID:
PDB-CPX-118901 (preferred)
Entry contents:
2 distinct polypeptide molecules
2 distinct DNA molecules
Macromolecules (4 distinct):
Serine/threonine-protein kinase toxin HipA Chains: A, D
Molecule details ›
Chains: A, D
Length: 448 amino acids
Theoretical weight: 50.42 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P23874 (Residues: 2-440; Coverage: 100%)
Gene names: JW1500, b1507, hipA
Sequence domains:
Antitoxin HipB Chains: B, P
Molecule details ›
Chains: B, P
Length: 91 amino acids
Theoretical weight: 10.34 KDa
Source organism: Escherichia coli MP020980.2
Expression system: Escherichia coli
UniProt:
  • Canonical: P23873 (Residues: 1-88; Coverage: 100%)
Gene names: JW1501, b1508, hipB
Sequence domains: Helix-turn-helix
Structure domains: lambda repressor-like DNA-binding domains
DNA (5'-D(*TP*CP*CP*CP*TP*AP*TP*CP*CP*CP*CP*TP*TP*AP*AP*GP*GP*GP*GP*AP*TP*AP*G)-3') Chain: T
Molecule details ›
Chain: T
Length: 23 nucleotides
Theoretical weight: 7.02 KDa
DNA (5'-D(*CP*TP*AP*TP*CP*CP*CP*CP*TP*TP*AP*AP*GP*GP*GP*GP*AP*TP*AP*GP*GP*GP*A)-3') Chain: E
Molecule details ›
Chain: E
Length: 23 nucleotides
Theoretical weight: 7.11 KDa

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1
Spacegroup: P21212
Unit cell:
a: 214.036Å b: 146.83Å c: 53.751Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.352 0.35 0.375
Expression system: Escherichia coli