› 5idd

X-ray diffraction
1.13Å resolution

Comment on S. W. M. Tanley and J. R. Helliwell Structural dynamics of cisplatin binding to histidine in a protein Struct. Dyn. 1, 034701 (2014) regarding the refinement of 4mwk, 4mwm, 4mwn and 4oxe and the method we have adopted.

Released:
DOI: 10.2210/pdb5idd/pdb
PDB entry 5idd coloured by chain, front view.
PDB entry 5idd coloured by chain, side view.
PDB entry 5idd coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Comment on "Structural dynamics of cisplatin binding to histidine in a protein" [Struct. Dyn. 1, 034701 (2014)].
Tanley SW, Helliwell JR
Struct Dyn 3 037101 (2016)
PMID: 27226979

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

5 bound ligands:
Ligand NO3 7 x NO3
Ligand NA 2 x NA
Ligand PT 3 x PT
Ligand DMS 1 x DMS
Ligand ACT 1 x ACT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BRUKER AXS MICROSTAR-H
Spacegroup: P1
Unit cell:
a: 26.957Å b: 31.794Å c: 34.055Å
α: 88.76° β: 71.99° γ: 68.33°
R-values:
R R work R free
0.18 0.178 0.22

Quick links

Citations

3 citation in other articles

The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years.
Grabowski et al. (2019)
2 more

1 mention without citation

Comment on "Structural dynamics of cisplatin binding to histidine in a protein" [Struct. Dyn. 1, 034701 (2014)].
Tanley et al. (2016)