5gz4

X-ray diffraction
2.55Å resolution

Crystal structure of snake venom phosphodiesterase (PDE) from Taiwan cobra (Naja atra atra)

Released:
Source organism: Naja atra
Entry authors: Lin CC, Wu BS, Wu WG

Function and Biology Details

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-104151 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (3 distinct):
Venom phosphodiesterase Chain: A
Molecule details ›
Chain: A
Length: 830 amino acids
Theoretical weight: 94.73 KDa
Source organism: Naja atra
UniProt:
  • Canonical: A0A2D0TC04 (Residues: 1-830; Coverage: 100%)
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, FUC
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL13C1
Spacegroup: P21212
Unit cell:
a: 171.679Å b: 65.876Å c: 89.615Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.237 0.235 0.288