› 4hza

X-ray diffraction
1.7Å resolution

Crystal Structure of the Immunoglobulin variable domain of Nectin-2 in monoclinic form

Released:
DOI: 10.2210/pdb4hza/pdb
PDB entry 4hza coloured by chain, front view.
PDB entry 4hza coloured by chain, side view.
PDB entry 4hza coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Ramagopal UA, Samanta D, Nathenson SG, Almo SC, New York Structural Genomics Research Consortium (NYSGRC), Atoms-to-Animals: The Immune Function Network (IFN)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-187722 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Nectin-2 Chains: A, B
Molecule details ›
Chains: A, B
Length: 128 amino acids
Theoretical weight: 13.95 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q92692 (Residues: 32-158; Coverage: 25%)
Gene names: HVEB, NECTIN2, PRR2, PVRL2
Sequence domains: Immunoglobulin V-set domain
Structure domains: Immunoglobulins

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P21
Unit cell:
a: 51.907Å b: 49.261Å c: 51.867Å
α: 90° β: 116.98° γ: 90°
R-values:
R R work R free
0.188 0.186 0.226
Expression system: Escherichia coli BL21(DE3)

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