› 4ytv

X-ray diffraction
1.45Å resolution

Crystal structure of Mdm35

Released:
DOI: 10.2210/pdb4ytv/pdb
PDB entry 4ytv coloured by chain, front view.
PDB entry 4ytv coloured by chain, side view.
PDB entry 4ytv coloured by chain, top view.
Source organism: Saccharomyces cerevisiae S288C
Primary publication:
Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Watanabe Y, Tamura Y, Kawano S, Endo T
Nat Commun 6 7922 (2015)
PMID: 26235513

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-129907 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Mitochondrial distribution and morphology protein 35 Chain: A
Molecule details ›
Chain: A
Length: 84 amino acids
Theoretical weight: 9.41 KDa
Source organism: Saccharomyces cerevisiae S288C
Expression system: Escherichia coli
UniProt:
  • Canonical: O60200 (Residues: 1-81; Coverage: 94%)
Gene names: MDM35, YKL053C-A
Sequence domains: Uncharacterised protein family (UPF0203)

Ligands and Environments

2 bound ligands:
Ligand GOL 1 x GOL
Ligand CO 1 x CO
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL38B1
Spacegroup: R32
Unit cell:
a: 59.144Å b: 59.144Å c: 123.277Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.197 0.197 0.211
Expression system: Escherichia coli

Quick links

Citations

17 review citations

Advances on the Transfer of Lipids by Lipid Transfer Proteins.
Wong et al. (2017)
16 more

1 mention without citation

Structural and mechanistic insights into phospholipid transfer by Ups1-Mdm35 in mitochondria.
Watanabe et al. (2015)