› 4yr7

X-ray diffraction
2.53Å resolution

Structure of LuxP In Complex With 1-deoxy-alpha-L-xylulofuranose-1,2-borate

Released:
DOI: 10.2210/pdb4yr7/pdb
PDB entry 4yr7 coloured by chain, front view.
PDB entry 4yr7 coloured by chain, side view.
PDB entry 4yr7 coloured by chain, top view.
Source organism: Vibrio harveyi
Entry authors: McDonough MA, Sattin S, Davis BG

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-156991 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Autoinducer 2-binding periplasmic protein LuxP Chains: A, B
Molecule details ›
Chains: A, B
Length: 345 amino acids
Theoretical weight: 39.34 KDa
Source organism: Vibrio harveyi
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P54300 (Residues: 21-365; Coverage: 100%)
Gene name: luxP
Sequence domains: Periplasmic binding protein domain
Structure domains: Rossmann fold

Ligands and Environments

1 bound ligand:
Ligand A1B 2 x A1B
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I03
Spacegroup: P212121
Unit cell:
a: 74.45Å b: 85.23Å c: 133.6Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.153 0.151 0.202
Expression system: Escherichia coli BL21(DE3)

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