4rft

X-ray diffraction
3.1Å resolution

T=1 subviral particle of Grouper nervous necrosis virus capsid protein deletion mutant (delta 1-34 & 218-338)

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 60-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-185006 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein alpha Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x
Molecule details ›
Chains: 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r, s, t, u, v, w, x
Length: 183 amino acids
Theoretical weight: 19.82 KDa
Source organism: Epinephelus coioides nervous necrosis virus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q8JNX5 (Residues: 35-217; Coverage: 54%)
Sequence domains: nodavirus capsid protein
Structure domains: Jelly Rolls

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL15A
Spacegroup: P42
Unit cell:
a: 288.947Å b: 288.947Å c: 175.124Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.241 0.238 0.288
Expression system: Escherichia coli