› 4jdu

X-ray diffraction
1.47Å resolution

The crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines.

Released:
DOI: 10.2210/pdb4jdu/pdb
PDB entry 4jdu coloured by chain, front view.
PDB entry 4jdu coloured by chain, side view.
PDB entry 4jdu coloured by chain, top view.
Source organism: Bacteroides fragilis NCTC 9343
Entry authors: Fan Y, Tan K, Bigelow L, Bearden J, Joachimiak A, Midwest Center for Structural Genomics (MCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-177469 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Aerotolerance-related membrane protein Chain: A
Molecule details ›
Chain: A
Length: 215 amino acids
Theoretical weight: 23.14 KDa
Source organism: Bacteroides fragilis NCTC 9343
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q5LCG5 (Residues: 85-296; Coverage: 62%)
Gene names: BF9343_2419, batB
Sequence domains: von Willebrand factor type A domain
Structure domains: von Willebrand factor, type A domain

Ligands and Environments

2 bound ligands:
Ligand FMT 1 x FMT
Ligand CA 1 x CA
2 modified residues:
Ligand MSE 7 x MSE
Ligand MLY 1 x MLY

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 19-ID
Spacegroup: P212121
Unit cell:
a: 39.277Å b: 49.871Å c: 85.451Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.182 0.182 0.198
Expression system: Escherichia coli BL21(DE3)

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