› 4ge8

X-ray diffraction
1.5Å resolution

OYE1-W116I complexed with (s)-Carvone

Released:
DOI: 10.2210/pdb4ge8/pdb
PDB entry 4ge8 coloured by chain, front view.
PDB entry 4ge8 coloured by chain, side view.
PDB entry 4ge8 coloured by chain, top view.
Source organism: Saccharomyces pastorianus
Primary publication:
X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase
Pompeu YA, Sullivan B, Stewart JD
ACS Catalysis 3 2376-2390 (2013)

Function and Biology Details

Reaction catalysed: 
NADPH + acceptor = NADP(+) + reduced acceptor
Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-169781 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NADPH dehydrogenase 1 Chain: A
Molecule details ›
Chain: A
Length: 400 amino acids
Theoretical weight: 45 KDa
Source organism: Saccharomyces pastorianus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q02899 (Residues: 1-400; Coverage: 100%)
Gene name: OYE1
Sequence domains: NADH:flavin oxidoreductase / NADH oxidase family
Structure domains: Aldolase class I

Ligands and Environments


Cofactor: Ligand FMN 1 x FMN
5 bound ligands:
Ligand MG 1 x MG
Ligand CL 3 x CL
Ligand NA 4 x NA
Ligand 1PE 4 x 1PE
Ligand 0WU 1 x 0WU
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X6A
Spacegroup: P43212
Unit cell:
a: 140.928Å b: 140.928Å c: 42.484Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.14 0.136 0.17
Expression system: Escherichia coli BL21(DE3)

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