3zl7

X-ray diffraction
3.2Å resolution

Function and Biology Details

Reaction catalysed:
Broad endopeptidase specificity. Cleaves Glu-Val-Asn-Leu-|-Asp-Ala-Glu-Phe in the Swedish variant of Alzheimer's amyloid precursor protein.
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-164257 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Beta-secretase 2 Chain: A
Molecule details ›
Chain: A
Length: 386 amino acids
Theoretical weight: 42.05 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9Y5Z0 (Residues: 75-460; Coverage: 78%)
Gene names: AEPLC, ALP56, ASP21, BACE2, CDA13, UNQ418/PRO852
Sequence domains: Eukaryotic aspartyl protease
Structure domains: Acid Proteases
FYNOMER 2B-H11 Chain: C
Molecule details ›
Chain: C
Length: 88 amino acids
Theoretical weight: 10.33 KDa
Source organism: synthetic construct
Expression system: Escherichia coli
Structure domains: SH3 Domains

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P43212
Unit cell:
a: 84.793Å b: 84.793Å c: 128.113Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.28 0.279 0.306
Expression systems:
  • Escherichia coli BL21(DE3)
  • Escherichia coli