3zgz

X-ray diffraction
2.4Å resolution

Ternary complex of E. coli leucyl-tRNA synthetase, tRNA(leu) and toxic moiety from agrocin 84 (TM84) in aminoacylation-like conformation

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-139770 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Leucine--tRNA ligase Chains: A, D
Molecule details ›
Chains: A, D
Length: 880 amino acids
Theoretical weight: 99.52 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: P07813 (Residues: 1-860; Coverage: 100%)
Gene names: JW0637, b0642, leuS
Sequence domains:
Structure domains:
TRNA-LEU UAA ISOACCEPTOR Chains: B, E
Molecule details ›
Chains: B, E
Length: 88 nucleotides
Theoretical weight: 28.4 KDa
Source organism: Escherichia coli K-12
Expression system: Not provided
Sequence domains: tRNA

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: C2
Unit cell:
a: 158.58Å b: 68.19Å c: 226.22Å
α: 90° β: 105.53° γ: 90°
R-values:
R R work R free
0.189 0.187 0.238
Expression systems:
  • Escherichia coli BL21
  • Not provided