3vpj

X-ray diffraction
2.5Å resolution

crystal structure of type VI effector Tse1 from Pseudomonas aeruginosa in complex with immune protein Tsi1

Released:

Function and Biology Details

Reaction catalysed:
Hydrolysis of gamma-D-glutamyl bonds to the L-terminus (position 7) of meso-diaminopimelic acid (meso-A(2)pm) in 7-(L-Ala-gamma-D-Glu)-meso-A(2)pm and 7-(L-Ala-gamma-D-Glu)-7-(D-Ala)-meso-A(2)pm. It is required that the D-terminal amino and carboxy groups of meso-A(2)pm are unsubstituted.
Biochemical function:
Biological process:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-191295 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Peptidoglycan amidase Tse1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 174 amino acids
Theoretical weight: 18.63 KDa
Source organism: Pseudomonas aeruginosa PAO1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9I2Q1 (Residues: 1-154; Coverage: 100%)
Gene names: PA1844, tse1
Structure domains: endopeptidase domain like (from Nostoc punctiforme)
Immune protein Tsi1 Chains: E, F, G, H
Molecule details ›
Chains: E, F, G, H
Length: 192 amino acids
Theoretical weight: 20.95 KDa
Source organism: Pseudomonas aeruginosa PAO1
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9I2Q0 (Residues: 1-172; Coverage: 100%)
Gene names: PA1845, tsi1
Sequence domains: Immune protein Tsi1
Structure domains: Lipocalin

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P3221
Unit cell:
a: 97Å b: 97Å c: 292.171Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.21 0.207 0.257
Expression system: Escherichia coli