› 3rgt

X-ray diffraction
1.9Å resolution

Crystal structure of d-mannonate dehydratase from Chromohalobacter salexigens complexed with D-Arabinohydroxamate

Released:
DOI: 10.2210/pdb3rgt/pdb
PDB entry 3rgt coloured by chain, front view.
PDB entry 3rgt coloured by chain, side view.
PDB entry 3rgt coloured by chain, top view.
Source organism: Chromohalobacter salexigens
Entry authors: Fedorov AA, Fedorov EV, Wichelecki D, Gerlt JA, Almo SC

Function and Biology Details

Reactions catalysed: 
D-gluconate = 2-dehydro-3-deoxy-D-gluconate + H(2)O
D-mannonate = 2-dehydro-3-deoxy-D-gluconate + H(2)O
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo dimer (preferred)
homo octamer
Assembly name:
PDBe Complex ID:
PDB-CPX-173010 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
D-galactonate dehydratase family member ManD Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 405 amino acids
Theoretical weight: 45.47 KDa
Source organism: Chromohalobacter salexigens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1QT89 (Residues: 2-403; Coverage: 100%)
Gene names: Csal_2974, manD
Sequence domains:
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand CO 4 x CO
Ligand EZ4 4 x EZ4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P21212
Unit cell:
a: 110.712Å b: 179.657Å c: 85.422Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.18 0.178 0.222
Expression system: Escherichia coli

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