3pev

X-ray diffraction
2.5Å resolution

S. cerevisiae Dbp5 L327V C-terminal domain bound to Gle1 and IP6

Released:

Function and Biology Details

Reaction catalysed:
ATP + H(2)O = ADP + phosphate
Biochemical function:
  • not assigned
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-148978 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
ATP-dependent RNA helicase DBP5 Chain: A
Molecule details ›
Chain: A
Length: 188 amino acids
Theoretical weight: 21.25 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P20449 (Residues: 297-482; Coverage: 39%)
Gene names: DBP5, RAT8, YOR046C
Sequence domains: Helicase conserved C-terminal domain
Structure domains: P-loop containing nucleotide triphosphate hydrolases
mRNA export factor GLE1 Chain: B
Molecule details ›
Chain: B
Length: 297 amino acids
Theoretical weight: 34.58 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: Q12315 (Residues: 244-538; Coverage: 55%)
Gene names: BRR3, D1049, GLE1, RSS1, YDL207W
Sequence domains: GLE1-like protein
Structure domains: GLE1-like

Ligands and Environments

3 bound ligands:
1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.3.1
Spacegroup: P6122
Unit cell:
a: 110.867Å b: 110.867Å c: 201.914Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.204 0.202 0.238
Expression system: Escherichia coli