› 3j1p

Electron Microscopy
6.5Å resolution

Atomic model of rabbit hemorrhagic disease virus

Released:
DOI: 10.2210/pdb3j1p/pdb
PDB entry 3j1p coloured by chain, front view.
PDB entry 3j1p coloured by chain, side view.
PDB entry 3j1p coloured by chain, top view.
Source organism: Rabbit hemorrhagic disease virus
Primary publication:
Atomic model of rabbit hemorrhagic disease virus by cryo-electron microscopy and crystallography.
Wang X, Xu F, Liu J, Gao B, Liu Y, Zhai Y, Ma J, Zhang K, Baker TS, Schulten K, Zheng D, Pang H, Sun F
PLoS Pathog 9 e1003132 (2013)
PMID: 23341770
Related structures: EMD-5410

Function and Biology Details

Reaction catalysed: 
NTP + H(2)O = NDP + phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo 180-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-123547 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
p254 Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 579 amino acids
Theoretical weight: 60.38 KDa
Source organism: Rabbit hemorrhagic disease virus
UniProt:
  • Canonical: F5BXG7 (Residues: 1766-2344; Coverage: 25%)
Sequence domains: Calicivirus coat protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 6.5Å
Relevant EMDB volumes: EMD-5410

Quick links

Citations

11 review citations

Enhanced sampling techniques in molecular dynamics simulations of biological systems.
Bernardi et al. (2015)
10 more

13 mentions without citation

Tools for the cryo-EM gold rush: going from the cryo-EM map to the atomistic model.
Kim et al. (2017)
12 more