› 3iym

Electron Microscopy
4.7Å resolution

Backbone Trace of the Capsid Protein Dimer of a Fungal Partitivirus from Electron Cryomicroscopy and Homology Modeling

Released:
DOI: 10.2210/pdb3iym/pdb
PDB entry 3iym coloured by chain, front view.
PDB entry 3iym coloured by chain, side view.
PDB entry 3iym coloured by chain, top view.
Source organism: Penicillium stoloniferum virus S
Primary publication:
Backbone trace of partitivirus capsid protein from electron cryomicroscopy and homology modeling.
Tang J, Pan J, Havens WM, Ochoa WF, Guu TS, Ghabrial SA, Nibert ML, Tao YJ, Baker TS
Biophys J 99 685-94 (2010)
PMID: 20643089
Related structures: EMD-5161

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 120-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-180551 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 434 amino acids
Theoretical weight: 46.83 KDa
Source organism: Penicillium stoloniferum virus S
UniProt:
  • Canonical: Q6YDQ6 (Residues: 1-434; Coverage: 100%)
Sequence domains: PsV, capsid protein

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4.7Å
Relevant EMDB volumes: EMD-5161

Quick links

Citations

6 review citations

50-plus years of fungal viruses.
Ghabrial et al. (2015)
5 more

3 mentions without citation

Structure of Fusarium poae virus 1 shows conserved and variable elements of partitivirus capsids and evolutionary relationships to picobirnavirus.
Tang et al. (2010)
2 more