› 3gvx

X-ray diffraction
2.2Å resolution

Crystal structure of Glycerate dehydrogenase related protein from Thermoplasma acidophilum

Released:
DOI: 10.2210/pdb3gvx/pdb
PDB entry 3gvx coloured by chain, front view.
PDB entry 3gvx coloured by chain, side view.
PDB entry 3gvx coloured by chain, top view.
Source organism: Thermoplasma acidophilum
Entry authors: Syed Ibrahim B, Kumaran D, Burley SK, Swaminathan S, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Reaction catalysed: 
An alcohol + NADP(+) = an aldehyde + NADPH
Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190864 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glycerate dehydrogenase related protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 290 amino acids
Theoretical weight: 32.6 KDa
Source organism: Thermoplasma acidophilum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9HJV5 (Residues: 2-282; Coverage: 93%)
Gene name: Ta0858
Sequence domains:
Structure domains: NAD(P)-binding Rossmann-like Domain

Ligands and Environments

1 bound ligand:
Ligand K 2 x K
1 modified residue:
Ligand MSE 14 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P212121
Unit cell:
a: 66.512Å b: 77.842Å c: 152.654Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.24 0.24 0.261
Expression system: Escherichia coli

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