› 3d82

X-ray diffraction
2.05Å resolution

Crystal structure of a cupin-2 domain containing protein (sfri_3543) from shewanella frigidimarina ncimb 400 at 2.05 A resolution

Released:
DOI: 10.2210/pdb3d82/pdb
PDB entry 3d82 coloured by chain, front view.
PDB entry 3d82 coloured by chain, side view.
PDB entry 3d82 coloured by chain, top view.
Source organism: Shewanella frigidimarina NCIMB 400
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170581 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cupin type-2 domain-containing protein Chains: A, B, C, D, E
Molecule details ›
Chains: A, B, C, D, E
Length: 102 amino acids
Theoretical weight: 12.28 KDa
Source organism: Shewanella frigidimarina NCIMB 400
Expression system: Escherichia coli
UniProt:
  • Canonical: Q07X94 (Residues: 1-101; Coverage: 84%)
Gene name: Sfri_3543
Sequence domains: Cupin domain
Structure domains: Jelly Rolls

Ligands and Environments

3 bound ligands:
Ligand NI 5 x NI
Ligand UNL 5 x UNL
Ligand GOL 2 x GOL
1 modified residue:
Ligand MSE 30 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL9-2
Spacegroup: C2221
Unit cell:
a: 56.92Å b: 95.14Å c: 237.37Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.187 0.186 0.212
Expression system: Escherichia coli

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