› 3cno

X-ray diffraction
2.3Å resolution

GDP-bound structue of TM YlqF

Released:
DOI: 10.2210/pdb3cno/pdb
PDB entry 3cno coloured by chain, front view.
PDB entry 3cno coloured by chain, side view.
PDB entry 3cno coloured by chain, top view.
Source organism: Thermotoga maritima
Primary publication:
Crystal structure of YlqF, a circularly permuted GTPase: implications for its GTPase activation in 50 S ribosomal subunit assembly.
Kim DJ, Jang JY, Yoon HJ, Suh SW
Proteins 72 1363-70 (2008)
PMID: 18536017

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-194620 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ribosome biogenesis GTPase A Chain: A
Molecule details ›
Chain: A
Length: 262 amino acids
Theoretical weight: 29.64 KDa
Source organism: Thermotoga maritima
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9WZM6 (Residues: 1-262; Coverage: 100%)
Gene names: TM_0768, rbgA, ylqF
Sequence domains: 50S ribosome-binding GTPase
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand GDP 1 x GDP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 6C1
Spacegroup: P212121
Unit cell:
a: 34.222Å b: 76.66Å c: 104.895Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.221 0.215 0.276
Expression system: Escherichia coli

Quick links

Citations

6 review citations

Driving ribosome assembly.
Kressler et al. (2010)
5 more

1 mention without citation

Structural basis for (p)ppGpp-mediated inhibition of the GTPase RbgA.
Pausch et al. (2018)