› 3c28

X-ray diffraction
2.6Å resolution

Crystal structure of the product synapse complex

Released:
DOI: 10.2210/pdb3c28/pdb
PDB entry 3c28 coloured by chain, front view.
PDB entry 3c28 coloured by chain, side view.
PDB entry 3c28 coloured by chain, top view.
Source organism: Escherichia phage P1
Entry authors: Ghosh K, Van Duyne GD

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
hetero octamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-116118 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Recombinase cre Chains: A, B
Molecule details ›
Chains: A, B
Length: 322 amino acids
Theoretical weight: 36.41 KDa
Source organism: Escherichia phage P1
Expression system: Not provided
UniProt:
  • Canonical: P06956 (Residues: 20-341; Coverage: 94%)
Gene name: cre
Sequence domains: Phage integrase family
Structure domains:
LoxP DNA, chain C Chain: C
Molecule details ›
Chain: C
Length: 34 nucleotides
Theoretical weight: 10.47 KDa
Source organism: Escherichia phage P1
Expression system: Not provided
LoxP DNA, chain D Chain: D
Molecule details ›
Chain: D
Length: 34 nucleotides
Theoretical weight: 10.44 KDa
Source organism: Escherichia phage P1
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X25
Spacegroup: C2221
Unit cell:
a: 108.254Å b: 122.453Å c: 178.991Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.228 0.225 0.292
Expression system: Not provided

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