› 3az5

X-ray diffraction
2.34Å resolution

Crystal structure of Pt/O-HEWL

Released:
DOI: 10.2210/pdb3az5/pdb
PDB entry 3az5 coloured by chain, front view.
PDB entry 3az5 coloured by chain, side view.
PDB entry 3az5 coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles.
Abe S, Tsujimoto M, Yoneda K, Ohba M, Hikage T, Takano M, Kitagawa S, Ueno T
Small 8 1314-9 (2012)
PMID: 22383363

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

1 bound ligand:
Ligand PT 5 x PT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL38B1
Spacegroup: P212121
Unit cell:
a: 30.144Å b: 55.006Å c: 71.23Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.232 0.229 0.303

Quick links

Citations

5 review citations

Expanding coordination chemistry from protein to protein assembly.
Sanghamitra et al. (2013)
4 more

1 mention without citation

Predicting binding sites from unbound versus bound protein structures.
Clark et al. (2020)