› 3amf

X-ray diffraction
1.6Å resolution

E13R mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)

Released:
DOI: 10.2210/pdb3amf/pdb
PDB entry 3amf coloured by chain, front view.
PDB entry 3amf coloured by chain, side view.
PDB entry 3amf coloured by chain, top view.
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Entry authors: Sato S, Nakanishi T, Inoue H, Kitamura M

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-175129 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
FMN-binding protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 122 amino acids
Theoretical weight: 13.18 KDa
Source organism: Desulfovibrio vulgaris str. 'Miyazaki F'
Expression system: Escherichia coli
UniProt:
  • Canonical: Q46604 (Residues: 1-122; Coverage: 100%)
Gene name: DvMF_2023
Sequence domains: Pyridoxamine 5'-phosphate oxidase
Structure domains: Electron Transport, Fmn-binding Protein; Chain A

Ligands and Environments

2 bound ligands:
Ligand FMN 2 x FMN
Ligand CL 2 x CL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE AR-NE3A
Spacegroup: P212121
Unit cell:
a: 54.129Å b: 60.443Å c: 72.002Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.194 0.193 0.224
Expression system: Escherichia coli

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