3al8

X-ray diffraction
3.6Å resolution

Plexin A2 / Semaphorin 6A complex

Released:

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero tetramer
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-128688 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (4 distinct):
Semaphorin-6A Chain: A
Molecule details ›
Chain: A
Length: 556 amino acids
Theoretical weight: 62.86 KDa
Source organism: Mus musculus
Expression system: Cricetulus griseus
UniProt:
  • Canonical: O35464 (Residues: 19-570; Coverage: 55%)
Gene names: Sema6a, Semaq
Sequence domains:
Structure domains:
Plexin-A2 Chain: B
Molecule details ›
Chain: B
Length: 539 amino acids
Theoretical weight: 60.19 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
UniProt:
  • Canonical: P70207 (Residues: 31-561; Coverage: 28%)
Gene names: Kiaa0463, Plxna2
Sequence domains:
Structure domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P6122
Unit cell:
a: 240.87Å b: 240.87Å c: 146.745Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.233 0.23 0.287
Expression systems:
  • Cricetulus griseus
  • Homo sapiens