› 2yno

X-ray diffraction
1.8Å resolution

yeast betaprime COP 1-304H6

Released:
DOI: 10.2210/pdb2yno/pdb
PDB entry 2yno coloured by chain, front view.
PDB entry 2yno coloured by chain, side view.
PDB entry 2yno coloured by chain, top view.
Source organisms:
Primary publication:
Molecular basis for recognition of dilysine trafficking motifs by COPI.
Jackson LP, Lewis M, Kent HM, Edeling MA, Evans PR, Duden R, Owen DJ
Dev Cell 23 1255-62 (2012)
PMID: 23177648

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-154450 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Coatomer subunit beta' Chains: A, B
Molecule details ›
Chains: A, B
Length: 310 amino acids
Theoretical weight: 35.48 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P41811 (Residues: 1-304; Coverage: 34%)
Gene names: G2827, SEC27, YGL137W
Sequence domains: WD domain, G-beta repeat
Structure domains: YVTN repeat-like/Quinoprotein amine dehydrogenase
POLY ALA Chain: P
Molecule details ›
Chain: P
Length: 5 amino acids
Theoretical weight: 373 Da
Source organism: unidentified

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: C2
Unit cell:
a: 171.56Å b: 50.51Å c: 74.47Å
α: 90° β: 103.99° γ: 90°
R-values:
R R work R free
0.19 0.188 0.223
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

20 review citations

Vesicle coats: structure, function, and general principles of assembly.
Faini et al. (2013)
19 more

1 mention without citation

Molecular basis for recognition of dilysine trafficking motifs by COPI.
Jackson et al. (2012)