› 2q4n

X-ray diffraction
1.32Å resolution

Ensemble refinement of the crystal structure of protein from Arabidopsis thaliana At1g79260

Released:
DOI: 10.2210/pdb2q4n/pdb
PDB entry 2q4n coloured by chain, ensemble of 8 models, front view.
PDB entry 2q4n coloured by chain, ensemble of 8 models, side view.
PDB entry 2q4n coloured by chain, ensemble of 8 models, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Ensemble refinement of protein crystal structures: validation and application.
Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN
Structure 15 1040-52 (2007)
PMID: 17850744

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130275 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peroxynitrite isomerase Rv2717c Chain: A
Molecule details ›
Chain: A
Length: 166 amino acids
Theoretical weight: 18.56 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: O64527 (Residues: 2-166; Coverage: 99%)
Gene names: At1g79260, YUP8H12R.14
Sequence domains: THAP4-like, heme-binding beta-barrel domain
Structure domains: Lipocalin

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 2 x MSE

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21212
Unit cell:
a: 60.056Å b: 80.026Å c: 36.886Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.152 0.152 0.195
Expression system: Escherichia coli

Quick links

Citations

19 review citations

Enzymes in jasmonate biosynthesis - structure, function, regulation.
Schaller et al. (2009)
18 more

3 mentions without citation

Fast and anisotropic flexibility-rigidity index for protein flexibility and fluctuation analysis.
Opron et al. (2014)
2 more