› 2q48

X-ray diffraction
1.8Å resolution

Ensemble refinement of the protein crystal structure of gene product from Arabidopsis thaliana At5g48480

Released:
DOI: 10.2210/pdb2q48/pdb
PDB entry 2q48 coloured by chain, ensemble of 8 models, front view.
PDB entry 2q48 coloured by chain, ensemble of 8 models, side view.
PDB entry 2q48 coloured by chain, ensemble of 8 models, top view.
Source organism: Arabidopsis thaliana
Primary publication:
Ensemble refinement of protein crystal structures: validation and application.
Levin EJ, Kondrashov DA, Wesenberg GE, Phillips GN
Structure 15 1040-52 (2007)
PMID: 17850744

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:
Structure domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-192324 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Protein At5g48480 Chains: A, B
Molecule details ›
Chains: A, B
Length: 166 amino acids
Theoretical weight: 17.67 KDa
Source organism: Arabidopsis thaliana
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9LV66 (Residues: 1-166; Coverage: 100%)
Gene names: At5g48480, MJE7.12
Structure domains: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
Spacegroup: P3221
Unit cell:
a: 55.871Å b: 55.871Å c: 147.341Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.167 0.167 0.214
Expression system: Escherichia coli

Quick links

Citations

19 review citations

Enzymes in jasmonate biosynthesis - structure, function, regulation.
Schaller et al. (2009)
18 more

1 mention without citation

Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: Ocimum tenuiflorum.
Upadhyay et al. (2019)