› 1zbn

Solution NMR

Solution structure of BIV TAR hairpin complexed to JDV Tat arginine-rich motif

Released:
DOI: 10.2210/pdb1zbn/pdb
PDB entry 1zbn coloured by chain, ensemble of 10 models, front view.
PDB entry 1zbn coloured by chain, ensemble of 10 models, side view.
PDB entry 1zbn coloured by chain, ensemble of 10 models, top view.
Source organism: Jembrana disease virus
Primary publication:
A single intermolecular contact mediates intramolecular stabilization of both RNA and protein.
Calabro V, Daugherty MD, Frankel AD
Proc Natl Acad Sci U S A 102 6849-54 (2005)
PMID: 15857951

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182652 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Protein Tat Chain: B
Molecule details ›
Chain: B
Length: 17 amino acids
Theoretical weight: 2.06 KDa
Source organism: Jembrana disease virus
Expression system: Not provided
UniProt:
  • Canonical: Q82854 (Residues: 65-81; Coverage: 15%)
Gene name: tat
BIV mRNA Chain: A
Molecule details ›
Chain: A
Length: 28 nucleotides
Theoretical weight: 8.92 KDa
Source organism: Jembrana disease virus
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: distance geometry and restrained molecular dynamics
Expression system: Not provided

Quick links

Citations

3 review citations

The new (dis)order in RNA regulation.
Järvelin et al. (2016)
2 more

5 mentions without citation

Face-time with TAR: Portraits of an HIV-1 RNA with diverse modes of effector recognition relevant for drug discovery.
Chavali et al. (2019)
4 more