› 1yyb

Solution NMR

Solution structure of 1-26 fragment of human programmed cell death 5 protein

Released:
DOI: 10.2210/pdb1yyb/pdb
PDB entry 1yyb coloured by chain, ensemble of 20 models, front view.
PDB entry 1yyb coloured by chain, ensemble of 20 models, side view.
PDB entry 1yyb coloured by chain, ensemble of 20 models, top view.
Source organism: Homo sapiens
Primary publication:
The N-terminal 26-residue fragment of human programmed cell death 5 protein can form a stable alpha-helix having unique electrostatic potential character.
Liu D, Yao H, Chen Y, Feng Y, Chen Y, Wang J
Biochem J 392 47-54 (2005)
PMID: 16083422

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-127072 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Programmed cell death protein 5 Chain: A
Molecule details ›
Chain: A
Length: 27 amino acids
Theoretical weight: 2.97 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: O14737 (Residues: 2-26; Coverage: 20%)
Gene names: PDCD5, TFAR19

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: torsion angle dynamics
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

1 review citation

Roles of programmed cell death protein 5 in inflammation and cancer (Review).
Wang et al. (2016)
7 other articles

5 mentions without citation

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.
Thévenet et al. (2012)
4 more