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X-ray diffraction
1.1Å resolution

High resolution Structure Of The Oxidized State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-149443 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Periplasmic [NiFe] hydrogenase small subunit Chain: S
Molecule details ›
Chain: S
Length: 267 amino acids
Theoretical weight: 28.79 KDa
Source organism: Nitratidesulfovibrio vulgaris str. 'Miyazaki F'
UniProt:
  • Canonical: P21853 (Residues: 51-317; Coverage: 100%)
Gene names: DvMF_0271, hydA
Sequence domains:
Structure domains:
Periplasmic [NiFe] hydrogenase large subunit Chain: L
Molecule details ›
Chain: L
Length: 534 amino acids
Theoretical weight: 59.22 KDa
Source organism: Nitratidesulfovibrio vulgaris str. 'Miyazaki F'
UniProt:
  • Canonical: P21852 (Residues: 19-552; Coverage: 94%)
Gene names: DvMF_0270, hydB
Sequence domains: Nickel-dependent hydrogenase
Structure domains: Cytochrome-c3 Hydrogenase, chain B

Ligands and Environments

1 modified residue:

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P212121
Unit cell:
a: 98.291Å b: 125.843Å c: 66.44Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.102 0.094 0.123