› 1rdg

X-ray diffraction
1.4Å resolution

RUBREDOXIN FROM DESULFOVIBRIO GIGAS. A MOLECULAR MODEL OF THE OXIDIZED FORM AT 1.4 ANGSTROMS RESOLUTION

Released:
DOI: 10.2210/pdb1rdg/pdb
PDB entry 1rdg coloured by chain, front view.
PDB entry 1rdg coloured by chain, side view.
PDB entry 1rdg coloured by chain, top view.
Source organism: Megalodesulfovibrio gigas
Primary publication:
Rubredoxin from Desulfovibrio gigas. A molecular model of the oxidized form at 1.4 A resolution.
Frey M, Sieker L, Payan F, Haser R, Bruschi M, Pepe G, LeGall J
J Mol Biol 197 525-41 (1987)
PMID: 3441010

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132363 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Rubredoxin Chain: A
Molecule details ›
Chain: A
Length: 52 amino acids
Theoretical weight: 5.68 KDa
Source organism: Megalodesulfovibrio gigas
Expression system: Not provided
UniProt:
  • Canonical: P00270 (Residues: 1-52; Coverage: 100%)
Sequence domains: Rubredoxin
Structure domains: Rubrerythrin, domain 2

Ligands and Environments

2 bound ligands:
Ligand FE 1 x FE
Ligand FOR 1 x FOR
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 19.731Å b: 41.67Å c: 24.394Å
α: 90° β: 109.4° γ: 90°
R-values:
R R work R free
0.136 not available not available
Expression system: Not provided

Quick links

Citations

41 citation in other articles

Accurate modeling of protein conformation by automatic segment matching.
Levitt M. (1992)
40 more

7 mentions without citation

Physics and evolution of thermophilic adaptation.
Berezovsky et al. (2005)
6 more