› 1lzy

X-ray diffraction
1.55Å resolution

X-RAY STRUCTURE OF TURKEY EGG LYSOZYME COMPLEX WITH DI-N-ACETYLCHITOBIOSE. RECOGNITION AND BINDING OF ALPHA-ANOMERIC FORM

Released:
DOI: 10.2210/pdb1lzy/pdb
PDB entry 1lzy coloured by chain, front view.
PDB entry 1lzy coloured by chain, side view.
PDB entry 1lzy coloured by chain, top view.
Source organism: Meleagris gallopavo
Primary publication:
X-ray structure of monoclinic turkey egg lysozyme at 1.3 A resolution.
Harata K
Acta Crystallogr D Biol Crystallogr 49 497-504 (1993)
PMID: 15299509

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132924 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.23 KDa
Source organism: Meleagris gallopavo
Expression system: Not provided
UniProt:
  • Canonical: P00703 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

Carbohydrate polymer : NEW Components: NDG, NAG
Carbohydrate polymer
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: P21
Unit cell:
a: 38.22Å b: 33.14Å c: 46Å
α: 90° β: 109.9° γ: 90°
R-values:
R R work R free
0.175 0.175 not available
Expression system: Not provided

Quick links

Citations

16 citation in other articles

Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations.
Mackerell et al. (2004)
15 more

2 mentions without citation

LigASite--a database of biologically relevant binding sites in proteins with known apo-structures.
Dessailly et al. (2008)
1 more