› 1lm4

X-ray diffraction
1.45Å resolution

Function and Biology Details

Reaction catalysed: 
Formyl-L-methionyl peptide + H(2)O = formate + methionyl peptide
Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-159509 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptide deformylase Chains: A, B
Molecule details ›
Chains: A, B
Length: 194 amino acids
Theoretical weight: 21.97 KDa
Source organism: Staphylococcus aureus
Expression system: Escherichia coli
UniProt:
  • Canonical: P68826 (Residues: 1-183; Coverage: 100%)
Gene names: def, def1, pdf1
Sequence domains: Polypeptide deformylase
Structure domains: Peptide deformylase

Ligands and Environments

2 bound ligands:
Ligand FE 2 x FE
Ligand GOL 1 x GOL
1 modified residue:
Ligand OCS 2 x OCS

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.3
Spacegroup: P212121
Unit cell:
a: 38.224Å b: 76.703Å c: 112.116Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.17 0.17 0.2
Expression system: Escherichia coli

Quick links

Citations

4 review citations

Investigational antimicrobial agents of 2013.
Pucci et al. (2013)
3 more

4 mentions without citation

PREDITOR: a web server for predicting protein torsion angle restraints.
Berjanskii et al. (2006)
3 more