› 1ed0

Solution NMR

NMR structural determination of viscotoxin A3 from Viscum album L.

Released:
DOI: 10.2210/pdb1ed0/pdb
PDB entry 1ed0 coloured by chain, ensemble of 10 models, front view.
PDB entry 1ed0 coloured by chain, ensemble of 10 models, side view.
PDB entry 1ed0 coloured by chain, ensemble of 10 models, top view.
Source organism: Viscum album
Primary publication:
NMR structural determination of viscotoxin A3 from Viscum album L.
Romagnoli S, Ugolini R, Fogolari F, Schaller G, Urech K, Giannattasio M, Ragona L, Molinari H
Biochem J 350 Pt 2 569-77 (2000)
PMID: 10947973

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-134356 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Viscotoxin-A3 Chain: A
Molecule details ›
Chain: A
Length: 46 amino acids
Theoretical weight: 4.84 KDa
Source organism: Viscum album
UniProt:
  • Canonical: P01538 (Residues: 27-72; Coverage: 54%)
Gene name: THI2.1
Sequence domains: Plant thionin
Structure domains: Thionin-like

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: RESTRAINED SIMULATED ANNEALING IN TORSION ANGLE SPACE, ITERATIVE RESTRAINTS REFINEMENT, RESTRAINED MOLECULAR DYNAMICS IN CARTESIAN COORDINATE SPACE MINIMIZATION

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Citations

3 review citations

The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology.
Fogolari et al. (2002)
2 more

9 mentions without citation

PhytAMP: a database dedicated to antimicrobial plant peptides.
Hammami et al. (2009)
8 more