Chemical Components in the PDB

pdbe.org/chem
spacer

2PO : Summary

Code

2PO

One-letter code

X

Molecule name

PHOSPHONATE

Systematic names

ProgramVersionName
ACDLabs 10.04 phosphonate

Formula

H O3 P

Formal charge

-2

Molecular weight

79.98 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 [O-]P([O-])=O
SMILES CACTVS 3.341 [O-][PH]([O-])=O
SMILES OpenEye OEToolkits 1.5.0 [O-]P(=O)[O-]
Canonical SMILES CACTVS 3.341 [O-][PH]([O-])=O
Canonical SMILES OpenEye OEToolkits 1.5.0 [O-]P(=O)[O-]

IUPAC InChI

InChI=1S/H3O3P/c1-4(2)3/h4H,(H2,1,2,3)/p-2

IUPAC InChI key

ABLZXFCXXLZCGV-UHFFFAOYSA-L
2PO

wwPDB Information

Atom count

5 (4 without Hydrogen)

Polymer type

Bound ligand

Type description

NON-POLYMER

Type code

HETAI

Is modified

No

Standard parent

Not Assigned

Defined at

2003-05-08

Last modified at

2011-06-04

Status

Released

Obsoleted

Not Assigned



2PO : Atoms of Molecule

Total Number of Atoms: 5
Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 P P P N N N 0 -0.972 1.143 0.28
2 O1P O O1P N N N -1 0.0 0.0 0.0
3 O2P O O2P N N N -1 -2.066 0.79 1.284
4 O3P O O3P N N N 0 -1.489 1.835 -0.979
5 HP H HP N N N 0 -0.193 2.122 0.931



2PO : Chemical Bonds

Total Number of Bonds: 4
Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O sing 1.53 N N
2 P O2P P O sing 1.53 N N
3 P O3P P O doub 1.53 N N
4 P HP P H sing 1.41 N N



2PO : Used in PDB Entries

Total Number of PDB Entries: 11
Ligand Code PDB Entry ID Type Total Distinct
2PO 1p4e Open in New Window Bound ligand 1 1
2PO 2ebf Open in New Window Bound ligand 1 1
2PO 2inu Open in New Window Bound ligand 2 1
2PO 2inv Open in New Window Bound ligand 2 1
2PO 5jvb Open in New Window Bound ligand 2 1
2PO 5o2j Open in New Window Bound ligand 1 1
2PO 6oc9 Open in New Window Bound ligand 10 1
2PO 6trq Open in New Window Bound ligand 2 1
2PO 6yfy Open in New Window Bound ligand 8 1
2PO 7qgv Open in New Window Bound ligand 8 1
2PO 8hsn Open in New Window Bound ligand 3 1