Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XMP    

Bonds between two atoms of the molecule

Total Number of Bonds: 40


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 P O1P P O sing 1.61 N N
2 P O2P P O sing 1.61 N N
3 P O5' P O sing 1.61 N N
4 P O3P P O doub 1.48 N N
5 O1P HOP1 O H sing 0.97 N N
6 O2P HOP2 O H sing 0.97 N N
7 O5' C5' O C sing 1.43 N N
8 C5' C4' C C sing 1.53 N N
9 C5' H5'2 C H sing 1.09 N N
10 C5' H5'1 C H sing 1.09 N N
11 C4' O4' C O sing 1.44 N N
12 C4' C3' C C sing 1.54 N N
13 C4' H4' C H sing 1.09 N N
14 O4' C1' O C sing 1.44 N N
15 C1' N9 C N sing 1.46 N N
16 C1' C2' C C sing 1.55 N N
17 C1' H1' C H sing 1.09 N N
18 N9 C4 N C sing 1.36 N Y
19 N9 C8 N C sing 1.36 N Y
20 C4 N3 C N sing 1.38 N N
21 C4 C5 C C doub 1.39 N Y
22 N3 C2 N C sing 1.34 N N
23 N3 H3 N H sing 0.97 N N
24 N1 C2 N C sing 1.34 N N
25 N1 C6 N C sing 1.35 N N
26 N1 H1 N H sing 0.97 N N
27 C2 O2 C O doub 1.22 N N
28 C6 O6 C O doub 1.22 N N
29 C6 C5 C C sing 1.46 N N
30 C5 N7 C N sing 1.35 N Y
31 N7 C8 N C doub 1.3 N Y
32 N7 H7 N H sing 0.97 N N
33 C8 H8 C H sing 1.08 N N
34 C2' O2' C O sing 1.43 N N
35 C2' C3' C C sing 1.55 N N
36 C2' H2' C H sing 1.09 N N
37 O2' H2O1 O H sing 0.97 N N
38 C3' O3' C O sing 1.43 N N
39 C3' H3' C H sing 1.09 N N
40 O3' H3O1 O H sing 0.97 N N