Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : XAC    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1 C O doub 1.22 N N
2 C1 N2 C N sing 1.35 N N
3 C1 C5 C C sing 1.41 N N
4 N1 C2 N C sing 1.35 N N
5 N1 C4 N C sing 1.39 N N
6 N1 C8 N C sing 1.46 N N
7 C2 N2 C N sing 1.34 N N
8 C2 O2 C O doub 1.22 N N
9 N2 C6 N C sing 1.46 N N
10 C3 N3 C N doub 1.32 N Y
11 C3 N4 C N sing 1.36 N Y
12 C3 C15 C C sing 1.48 N Y
13 N3 C4 N C sing 1.33 N Y
14 O3 C12 O C sing 1.36 N N
15 O3 C18 O C sing 1.43 N N
16 C4 C5 C C doub 1.39 N Y
17 N4 C5 N C sing 1.38 N Y
18 O4 C19 O C doub 1.21 N N
19 N5 C19 N C sing 1.35 N N
20 N5 C20 N C sing 1.46 N N
21 C6 C7 C C sing 1.53 N N
22 N6 C21 N C sing 1.47 N N
23 C7 C11 C C sing 1.53 N N
24 C8 C9 C C sing 1.53 N N
25 C9 C10 C C sing 1.53 N N
26 C12 C13 C C doub 1.39 N Y
27 C12 C17 C C sing 1.39 N Y
28 C13 C14 C C sing 1.38 N Y
29 C14 C15 C C doub 1.4 N Y
30 C15 C16 C C sing 1.4 N Y
31 C16 C17 C C doub 1.38 N Y
32 C18 C19 C C sing 1.51 N N
33 C20 C21 C C sing 1.53 N N
34 N4 HN4 N H sing 0.97 N N
35 N5 HN5 N H sing 0.97 N N
36 C6 H6 C H sing 1.09 N N
37 C6 H6A C H sing 1.09 N N
38 N6 HN6 N H sing 1.01 N N
39 N6 HN6A N H sing 1.01 N N
40 C7 H7 C H sing 1.09 N N
41 C7 H7A C H sing 1.09 N N
42 C8 H8 C H sing 1.09 N N
43 C8 H8A C H sing 1.09 N N
44 C9 H9 C H sing 1.09 N N
45 C9 H9A C H sing 1.09 N N
46 C10 H10 C H sing 1.09 N N
47 C10 H10A C H sing 1.09 N N
48 C10 H10B C H sing 1.09 N N
49 C11 H11 C H sing 1.09 N N
50 C11 H11A C H sing 1.09 N N
51 C11 H11B C H sing 1.09 N N
52 C13 H13 C H sing 1.08 N N
53 C14 H14 C H sing 1.08 N N
54 C16 H16 C H sing 1.08 N N
55 C17 H17 C H sing 1.08 N N
56 C18 H18 C H sing 1.09 N N
57 C18 H18A C H sing 1.09 N N
58 C20 H20 C H sing 1.09 N N
59 C20 H20A C H sing 1.09 N N
60 C21 H21 C H sing 1.09 N N
61 C21 H21A C H sing 1.09 N N