Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : VDW    

Bonds between two atoms of the molecule

Total Number of Bonds: 37


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 SG2 CB2 S C sing 1.81 N N
2 CB2 CA2 C C sing 1.53 N N
3 CA2 N2 C N sing 1.47 N N
4 CA2 C2 C C sing 1.51 N N
5 N2 CD1 N C sing 1.35 N N
6 O11 C1 O C doub 1.21 N N
7 CG1 CD1 C C sing 1.51 N N
8 CG1 CB1 C C sing 1.53 N N
9 O12 C1 O C sing 1.34 N N
10 CD1 OE1 C O doub 1.21 N N
11 C1 CA1 C C sing 1.51 N N
12 N1 CA1 N C sing 1.47 N N
13 C2 N3 C N sing 1.35 N N
14 C2 O2 C O doub 1.21 N N
15 N3 CA3 N C sing 1.46 N N
16 CA1 CB1 C C sing 1.53 N N
17 CA3 C3 C C sing 1.51 N N
18 C3 O31 C O doub 1.21 N N
19 C3 O32 C O sing 1.34 N N
20 N1 HN13 N H sing 1.01 N N
21 N1 HN11 N H sing 1.01 N N
22 N1 HN12 N H sing 1.01 N N
23 CA1 HA1 C H sing 1.09 N N
24 O12 H1 O H sing 0.97 N N
25 CB1 HB13 C H sing 1.09 N N
26 CB1 HB12 C H sing 1.09 N N
27 CG1 HG13 C H sing 1.09 N N
28 CG1 HG12 C H sing 1.09 N N
29 N2 HN2 N H sing 0.97 N N
30 CA2 HA2 C H sing 1.09 N N
31 CB2 HB23 C H sing 1.09 N N
32 CB2 HB22 C H sing 1.09 N N
33 SG2 HSG S H sing 1.34 N N
34 N3 HN3 N H sing 0.97 N N
35 CA3 HA31 C H sing 1.09 N N
36 CA3 HA32 C H sing 1.09 N N
37 O32 H2 O H sing 0.97 N N