Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : UGB    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1D N1 C N sing 1.47 N N
2 C6 N1 C N sing 1.37 N N
3 N1 C2 N C sing 1.35 N N
4 C2 O2 C O doub 1.22 N N
5 C2 N3 C N sing 1.35 N N
6 C4 N3 C N sing 1.35 N N
7 C5 C4 C C sing 1.42 N N
8 C4 O4 C O doub 1.22 N N
9 C6 C5 C C doub 1.35 N N
10 C5 H5 C H sing 1.08 N N
11 C6 H6 C H sing 1.08 N N
12 O2A PA O P doub 1.48 N N
13 O3A PA O P sing 1.61 N N
14 PA O1A P O sing 1.61 N N
15 PA O5D P O sing 1.61 N N
16 O2B PB O P doub 1.48 N N
17 O3A PB O P sing 1.61 N N
18 O3B PB O P sing 1.61 N N
19 PB O1B P O sing 1.61 N N
20 O'P C6' O C doub 1.21 N N
21 C6' O'Q C O sing 1.34 N N
22 O'Q HO'Q O H sing 0.97 N N
23 O3B C1' O C sing 1.43 N N
24 O5' C1' O C sing 1.43 N N
25 C1' C2' C C sing 1.53 N N
26 C1' H1' C H sing 1.09 N N
27 O1A HO1A O H sing 0.97 N N
28 O1B HO1B O H sing 0.97 N N
29 C2D C1D C C sing 1.55 N N
30 O4D C1D O C sing 1.44 N N
31 C1D H1D C H sing 1.09 N N
32 C3' C2' C C sing 1.53 N N
33 C2' O2' C O sing 1.43 N N
34 C2' H2' C H sing 1.09 N N
35 O2' HO2' O H sing 0.97 N N
36 C3D C2D C C sing 1.55 N N
37 C2D O2D C O sing 1.43 N N
38 C2D H2D C H sing 1.09 N N
39 O2D HO2D O H sing 0.97 N N
40 C4' C3' C C sing 1.53 N N
41 C3' O3' C O sing 1.43 N N
42 C3' H3' C H sing 1.09 N N
43 O3' HO3' O H sing 0.97 N N
44 C3D O3D C O sing 1.43 N N
45 C3D C4D C C sing 1.54 N N
46 C3D H3D C H sing 1.09 N N
47 O3D HO3D O H sing 0.97 N N
48 C5' C4' C C sing 1.53 N N
49 C4' O4' C O sing 1.43 N N
50 C4' H4' C H sing 1.09 N N
51 O4' HO4' O H sing 0.97 N N
52 C5D C4D C C sing 1.53 N N
53 C4D O4D C O sing 1.44 N N
54 C4D H4D C H sing 1.09 N N
55 C6' C5' C C sing 1.51 N N
56 C5' O5' C O sing 1.43 N N
57 C5' H5' C H sing 1.09 N N
58 O5D C5D O C sing 1.43 N N
59 C5D H5D C H sing 1.09 N N
60 C5D H5DA C H sing 1.09 N N
61 N3 HN3 N H sing 0.97 N N