Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TR5    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2' C2' O C sing 1.43 N N
2 C2 N3 C N doub 1.32 N Y
3 C2 N1 C N sing 1.33 N Y
4 O3' C3' O C sing 1.43 N N
5 N3 C4 N C sing 1.34 N Y
6 N1 C6 N C doub 1.33 N Y
7 C2' C3' C C sing 1.55 N N
8 C2' C1' C C sing 1.55 N N
9 C3' C4' C C sing 1.54 N N
10 C4 C5 C C doub 1.38 N Y
11 C4 N9 C N sing 1.36 N Y
12 C6 C5 C C sing 1.38 N Y
13 C6 N61 C N sing 1.37 N N
14 C62 N61 C N sing 1.46 N N
15 C1' N9 C N sing 1.46 N N
16 C1' O4' C O sing 1.44 N N
17 C5 C7 C C sing 1.46 N Y
18 N9 C8 N C sing 1.39 N Y
19 N61 N71 N N sing 1.4 N N
20 C4' C5' C C sing 1.53 N N
21 C4' O4' C O sing 1.44 N N
22 C5' O5' C O sing 1.43 N N
23 C7 C8 C C doub 1.35 N Y
24 C7 C72 C C sing 1.47 N N
25 N71 C72 N C doub 1.31 N N
26 C72 N73 C N sing 1.39 N N
27 O5' PB O P sing 1.61 N N
28 O2 PB O P doub 1.48 N N
29 O1 PB O P sing 1.61 N N
30 PB O3 P O sing 1.61 N N
31 O3 H1 O H sing 0.97 N N
32 O1 H2 O H sing 0.97 N N
33 C5' H3 C H sing 1.09 N N
34 C5' H4 C H sing 1.09 N N
35 C4' H5 C H sing 1.09 N N
36 C3' H6 C H sing 1.09 N N
37 O3' H7 O H sing 0.97 N N
38 C2' H8 C H sing 1.09 N N
39 O2' H9 O H sing 0.97 N N
40 C1' H10 C H sing 1.09 N N
41 C8 H11 C H sing 1.08 N N
42 C2 H12 C H sing 1.08 N N
43 C62 H13 C H sing 1.09 N N
44 C62 H14 C H sing 1.09 N N
45 C62 H15 C H sing 1.09 N N
46 N73 H16 N H sing 0.97 N N
47 N73 H17 N H sing 0.97 N N