Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TPP    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1' C2' N C doub 1.32 N Y
2 N1' C6' N C sing 1.33 N Y
3 C2' CM2 C C sing 1.51 N N
4 C2' N3' C N sing 1.32 N Y
5 CM2 HM21 C H sing 1.09 N N
6 CM2 HM22 C H sing 1.09 N N
7 CM2 HM23 C H sing 1.09 N N
8 N3' C4' N C doub 1.33 N Y
9 C4' N4' C N sing 1.38 N N
10 C4' C5' C C sing 1.4 N Y
11 N4' HN41 N H sing 0.97 N N
12 N4' HN42 N H sing 0.97 N N
13 C5' C6' C C doub 1.38 N Y
14 C5' C7' C C sing 1.51 N N
15 C6' H6' C H sing 1.08 N N
16 C7' N3 C N sing 1.46 N N
17 C7' H7'1 C H sing 1.09 N N
18 C7' H7'2 C H sing 1.09 N N
19 N3 C2 N C doub 1.29 N Y
20 N3 C4 N C sing 1.32 N Y
21 C2 S1 C S sing 1.71 N Y
22 C2 H2 C H sing 1.08 N N
23 S1 C5 S C sing 1.76 N Y
24 C5 C4 C C doub 1.34 N Y
25 C5 C6 C C sing 1.51 N N
26 C4 CM4 C C sing 1.51 N N
27 CM4 HM41 C H sing 1.09 N N
28 CM4 HM42 C H sing 1.09 N N
29 CM4 HM43 C H sing 1.09 N N
30 C6 C7 C C sing 1.53 N N
31 C6 H61 C H sing 1.09 N N
32 C6 H62 C H sing 1.09 N N
33 C7 O7 C O sing 1.43 N N
34 C7 H71 C H sing 1.09 N N
35 C7 H72 C H sing 1.09 N N
36 O7 PA O P sing 1.61 N N
37 PA O1A P O doub 1.48 N N
38 PA O2A P O sing 1.61 N N
39 PA O3A P O sing 1.61 N N
40 O2A HOA2 O H sing 0.97 N N
41 O3A PB O P sing 1.61 N N
42 PB O1B P O doub 1.48 N N
43 PB O2B P O sing 1.61 N N
44 PB O3B P O sing 1.61 N N
45 O2B HOB2 O H sing 0.97 N N
46 O3B HOB3 O H sing 0.97 N N