Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : TIM    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C5 C6 C C sing 1.53 N N
2 C5 N4 C N sing 1.47 N N
3 C5 H5 C H sing 1.09 N N
4 C5 H5A C H sing 1.09 N N
5 C6 O1 C O sing 1.43 N N
6 C6 H6 C H sing 1.09 N N
7 C6 H6A C H sing 1.09 N N
8 O1 C2 O C sing 1.43 N N
9 C2 C3 C C sing 1.53 N N
10 C2 H2 C H sing 1.09 N N
11 C2 H2A C H sing 1.09 N N
12 C3 N4 C N sing 1.47 N N
13 C3 H3 C H sing 1.09 N N
14 C3 H3A C H sing 1.09 N N
15 N4 C7 N C sing 1.4 N N
16 C7 N8 C N doub 1.31 N Y
17 C7 C11 C C sing 1.38 N Y
18 N8 S9 N S sing 1.7 N Y
19 S9 N10 S N sing 1.7 N Y
20 N10 C11 N C doub 1.31 N Y
21 C11 O12 C O sing 1.36 N N
22 O12 C13 O C sing 1.43 N N
23 C13 C14 C C sing 1.53 N N
24 C13 H13 C H sing 1.09 N N
25 C13 H13A C H sing 1.09 N N
26 C14 O15 C O sing 1.43 N N
27 C14 C16 C C sing 1.53 N N
28 C14 H14 C H sing 1.09 N N
29 O15 HO15 O H sing 0.97 N N
30 C16 N17 C N sing 1.47 N N
31 C16 H16 C H sing 1.09 N N
32 C16 H16A C H sing 1.09 N N
33 N17 C18 N C sing 1.47 N N
34 N17 HN17 N H sing 1.01 N N
35 C18 C19 C C sing 1.53 N N
36 C18 C20 C C sing 1.53 N N
37 C18 C21 C C sing 1.53 N N
38 C19 H19 C H sing 1.09 N N
39 C19 H19A C H sing 1.09 N N
40 C19 H19B C H sing 1.09 N N
41 C20 H20 C H sing 1.09 N N
42 C20 H20A C H sing 1.09 N N
43 C20 H20B C H sing 1.09 N N
44 C21 H21 C H sing 1.09 N N
45 C21 H21A C H sing 1.09 N N
46 C21 H21B C H sing 1.09 N N