Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : THG    

Bonds between two atoms of the molecule

Total Number of Bonds: 57


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N3 C2 N C sing 1.36 N Y
2 N3 C4 N C sing 1.35 N Y
3 N3 HN3 N H sing 0.97 N N
4 C2 N1 C N doub 1.32 N Y
5 C2 N2 C N sing 1.37 N N
6 N1 C8A N C sing 1.34 N Y
7 C8A C4A C C doub 1.39 N Y
8 C8A N8 C N sing 1.39 N N
9 C4A C4 C C sing 1.4 N Y
10 C4A N5 C N sing 1.41 N N
11 C4 O4 C O doub 1.22 N N
12 N8 C7 N C sing 1.47 N N
13 N8 HN8 N H sing 0.97 N N
14 C7 C6 C C sing 1.54 N N
15 C7 HC71 C H sing 1.09 N N
16 C7 HC72 C H sing 1.09 N N
17 C6 N5 C N sing 1.47 N N
18 C6 C9 C C sing 1.53 N N
19 C6 HC6 C H sing 1.09 N N
20 N5 HN5 N H sing 0.97 N N
21 C9 N10 C N sing 1.46 N N
22 C9 HC91 C H sing 1.09 N N
23 C9 HC92 C H sing 1.09 N N
24 N10 C4' N C sing 1.39 N N
25 N10 H10 N H sing 0.97 N N
26 C4' C3' C C doub 1.39 N Y
27 C4' C5' C C sing 1.39 N Y
28 C3' C2' C C sing 1.37 N Y
29 C3' HC3 C H sing 1.08 N N
30 C2' C1' C C doub 1.4 N Y
31 C2' HC2 C H sing 1.08 N N
32 C1' C6' C C sing 1.4 N Y
33 C1' C11 C C sing 1.48 N N
34 C6' C5' C C doub 1.38 N Y
35 C6' HC61 C H sing 1.08 N N
36 C5' HC5 C H sing 1.08 N N
37 C11 N C N sing 1.35 N N
38 C11 O11 C O doub 1.22 N N
39 N CA N C sing 1.47 N N
40 N HN N H sing 0.97 N N
41 CA C C C sing 1.51 N N
42 CA CB C C sing 1.53 N N
43 CA HCA C H sing 1.09 N N
44 C OX2 C O sing 1.34 N N
45 C OX1 C O doub 1.21 N N
46 OX2 HX2 O H sing 0.97 N N
47 CB CG C C sing 1.53 N N
48 CB HCB1 C H sing 1.09 N N
49 CB HCB2 C H sing 1.09 N N
50 CG CD C C sing 1.51 N N
51 CG HCG1 C H sing 1.09 N N
52 CG HCG2 C H sing 1.09 N N
53 CD OE1 C O doub 1.21 N N
54 CD OE2 C O sing 1.34 N N
55 OE2 HE2 O H sing 0.97 N N
56 N2 HN21 N H sing 0.97 N N
57 N2 HN22 N H sing 0.97 N N